• UNIVERSITY OF ILLINOIS URBANA-CHAMPAIGN

Genotyping

Please, contact us to discuss how we can be of assistance in achieving your project goals or to receive a quote for your project.

Genotyping and variant calling analyses (SNP, indel, structural variations) can be performed using a wide variety of sequencing approaches (short read, long read, linked-read) in a range of species: from microbial to plant to mammalian.
HPCBio has extensive experience with many different software and workflows such as GATK, Sentieon, freeBayes, CNVKit, and the PacBio variant detection suite. 
  • Germ-line and somatic variant analysis
  • Structural variant analysis