Roy J. Carver
Biotechnology Center

University of Illinois at Urbana-Champaign

University of Illinois

Publications List

The publications below include original research articles that utilized our analytical services, as well as reviews published by our staff. Only publications dating back to 2017 are included.

2023

  • Mourikes V.E., Santacruz-Marquez R., Deviney A., Laws M.J., Ulanov A.V., La Frano M.R., Flaws J.A. (2023). Ovarian Antral Follicles Metabolize Imidacloprid In Vitro. Toxicol Sci. (In press). https://doi.org/10.1093/toxsci/kfad089
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  • Chuchueva N., Carta F., Nguyen H.N., Luevano J., Lewis I.A., Rios-Castillo I., Fanos V., King E., Swistushkin V., Reshetov I., Rusetsky Y., Shestakova K., Moskaleva N., Mariani C., Castillo-Carniglia A., Grapov D., Fahrmann J., La Frano M.R., Puxeddu R., Appolonova S.A., Brito A. (2023) Metabolomics of head and neck cancer in biofluids: an integrative systematic review. Metabolomics 19:77.
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  • Laws, M. J., Meling, D. D., Deviney, A. R., Santacruz-Márquez, R., & Flaws, J. A. (2023). Long-term exposure to di (2-ethylhexyl) phthalate, diisononyl phthalate, and a mixture of phthalates alters estrous cyclicity and/or impairs gestational index and birth rate in mice. Toxicological Sciences, 193(1), 48-61. 

  • Caesar, L. K., Butun, F. A., Robey, M. T., Ayon, N. J., Gupta, R., Dainko, D., ... & Kelleher, N. L. (2023). Correlative metabologenomics of 110 fungi reveals metabolite–gene cluster pairs. Nature Chemical Biology, 1-9. 

  • Wang, G., Li, J., Bojmar, L., Chen, H., Li, Z., Tobias, G. C., ... & Lyden, D. (2023). Tumour extracellular vesicles and particles induce liver metabolic dysfunction. Nature, 1-9. 

  • Jiang, Q., Sherlock, D. N., Zhang, H., Guyader, J., Pan, Y.-X., & Loor, J. J. (2023). One-carbon metabolism and related pathways in ruminal and small intestinal epithelium of lactating dairy cows. Journal of Animal Science, 101, skad062. https://doi.org/10.1093/jas/skad062 

  • Mogol, A. N., Zuo, Q., Yoo, J. Y., Kaminsky, A. Z., Imir, O. B., Landesman, Y., ... & Madak Erdogan, Z. (2023). NAD+ Metabolism Generates a Metabolic Vulnerability in Endocrine-Resistant Metastatic Breast Tumors in Females. Endocrinology, bqad073. 

  • Rashid, F., Dubinkina, V., Ahmad, S., Maslov, S., & Irudayaraj, J. M. K. (2023). Gut Microbiome-Host Metabolome Homeostasis upon Exposure to PFOS and GenX in Male Mice. Toxics, 11(3), 281. 

  • Graham, L. T., Foss, K. D., Reinhart, J. M., Smith, K. M., Hague, D. W., & Li, Z. (2023). The pharmacokinetics of single oral dose extended‐release topiramate and adverse effects after multi‐dose administration in healthy cats. Journal of Veterinary Pharmacology and Therapeutics. 

  • Kim, J. S., Soto-Diaz, K., Bingham, T. W., Steelman, A. J., & Das, A. (2023). Role of Omega-3 Endocannabinoids in the Modulation of T-cell Activity in a Multiple Sclerosis Experimental Autoimmune Encephalomyelitis (EAE) Model. Journal of Biological Chemistry, 102886. 

  • Enos, J. K., Ducay, R., Paitz, R. T., Ward, M. P., & Hauber, M. E. (2023). Female red-winged blackbirds (Agelaius phoeniceus) do not alter nest site selection, maternal programming, or hormone-mediated maternal effects in response to perceived nest predation or brood parasitism risk. General and Comparative Endocrinology, 114322. 

  • Bown, L., Hirota, R., Goettge, M. N., Cui, J., Krist, D. T., Zhu, L., ... & Metcalf, W. W. (2023). A Novel Pathway for Biosynthesis of the Herbicidal Phosphonate Natural Product Phosphonothrixin Is Widespread in Actinobacteria. Journal of Bacteriology, e00485-22. 

  • Morales, M. E., Iocoli, G. A., Allegrini, M., Villamil, M. B., & Zabaloy, M. C. (2023). Response of root exudates and bacterial community to N fertilization and termination methods in Avena sativa L. as a winter cover crop model. European Journal of Soil Biology, 114, 103453. 

  • Kutchy, N. A., Palermo, A., Ma, R., Li, Z., Ulanov, A., Callen, S., ... & Hu, G. (2023). Changes in Plasma Metabolic Signature upon Acute and Chronic Morphine Administrati 

  • Jiang, Q., & Loor, J. J. (2023). The Lipidome of the Gastrointestinal Tract in Lactating Holstein Cows. Ruminants, 3(1), 76-91. 

  • Prabhakara, K. H., & Kuehn, S. (2023). Algae drive convergent bacterial community assembly at low dilution frequency. IScience. 

  • Mishra, S., Wang, Z., Volk, M. J., & Zhao, H. (2023). Design and application of a kinetic model of lipid metabolism in Saccharomyces cerevisiae. Metabolic Engineering, 75, 12-18. 

  • Iwadate, Y., Golubeva, Y. A., & Slauch, J. M. (2023). Cation Homeostasis: Coordinate Regulation of Polyamine and Magnesium Levels in Salmonella. Mbio, 14(1), e02698-22. 

  • Párraga Solórzano, P. K., Bastille, T. S., Radin, J. N., & Kehl-Fie, T. E. (2023). A Manganese-independent Aldolase Enables Staphylococcus aureus To Resist Host-imposed Metal Starvation. Mbio, e03223-22. 

  • Nuccio, D. A., Normann, M. C., Zhou, H., Grippo, A. J., & Singh, P. (2023). Microbiome and Metabolome Variation as Indicator of Social Stress in Female Prairie Voles. International Journal of Molecular Sciences, 24(2), 1677. 

  • O’Flaherty, S., Cobian, N., & Barrangou, R. (2023). Impact of Pomegranate on Probiotic Growth, Viability, Transcriptome and Metabolism. Microorganisms, 11(2), 404. 

  • Berihu, M., Somera, T. S., Malik, A., Medina, S., Piombo, E., Tal, O., ... & Freilich, S. (2023). A framework for the targeted recruitment of crop-beneficial soil taxa based on network analysis of metagenomics data. Microbiome, 11(1), 8. 

  • Babadi, R. S., Williams, P. L., Li, Z., Smith, R. L., Strakovsky, R. S., Hauser, R., ... & James-Todd, T. (2023). Urinary phthalate metabolite concentrations and hot flash outcomes: Longitudinal associations in the Midlife Women's Health Study. Environmental Research, 216, 114576. 

  • Golder, H. M., LeBlanc, S. J., Duffield, T., Rossow, H. A., Bogdanich, R., Hernandez, L., ... & Lean, I. J. (2023). Characterizing ruminal acidosis risk: A multiherd, multicountry study. Journal of Dairy Science, 106(5), 3155-3175. 

  • Shao, T., McCann, J. C., & Shike, D. W. (2023). Effects of Late Gestation Supplements Differing in Fatty Acid Amount and Profile to Beef Cows on Cow Performance, Steer Progeny Growth Performance through Weaning, and Relative MRNA Expression of Genes Associated with Muscle and Adipose Tissue Development. Animals, 13(3), 437. 

  • Wu, Y., Torabi, S. F., Lake, R. J., Hong, S., Yu, Z., Wu, P., ... & Lu, Y. (2023). Simultaneous Fe2+/Fe3+ imaging shows Fe3+ over Fe2+ enrichment in Alzheimer’s disease mouse brain. Science Advances, 9(16), eade7622. 

  • Bryson, A. E., Lanier, E. R., Lau, K. H., Hamilton, J. P., Vaillancourt, B., Mathieu, D., ... & Hamberger, B. (2023). Uncovering a miltiradiene biosynthetic gene cluster in the Lamiaceae reveals a dynamic evolutionary trajectory. Nature Communications, 14(1), 343. 

  • Cinzori, M. E., Pacyga, D. C., Babayev, E., Duncan, F. E., Li, Z., Williams, P. L., ... & Strakovsky, R. S. (2023). Ovarian volume partially explains associations of phthalate biomarkers with anti-Müllerian hormone and estradiol in midlife women. Environment international, 172, 107771. 

  • Heath H., Rosario R., McMichael L., Fanter R., Brito A., Alarcon N., Quintana-Diaz A., Schaffner A., Jelalian E., Wing R., Phelan S., La Frano, M.R. (2023) Gestational Diabetes Is Characterized by Decreased Medium-Chain Acylcarnitines and Elevated Purine Degradation Metabolites across Pregnancy: A Case Control Time-Course Analysis. Accepted by Journal of Proteome Research. https://doi.org/10.1021/acs.jproteome.2c00430

  • Shah M.M., Ahmad K., Boota S., La Frano M.R., Irudayaraj J. (2023) Sensor technologies for the detection and monitoring of endocrine-disrupting chemicals. Frontiers in Bioengineering and Biotechnology. 11. https://doi.org/10.3389/fbioe.2023.1141523

  • Jiang Q., Sherlock D.N., Guyader J., Loor J.J. (2023) Abundance of Amino Acid Transporters and mTOR Pathway Components in the Gastrointestinal Tract of Lactating Holstein Cows. Animals. 13(7), 1189; https://doi.org/10.3390/ani13071189

2022

  • Shinn, L. M., Mansharamani, A., Baer, D. J., Novotny, J. A., Charron, C. S., Khan, N. A., Zhu, R., & Holscher, H. D. (2022). Fecal Metabolites as Biomarkers for Predicting Food Intake by Healthy Adults. The Journal of Nutrition, 152(12), 2956–2965. https://doi.org/10.1093/jn/nxac195 

  • Mallott, E. K., Skovmand, L. H., Garber, P. A., & Amato, K. R. (2022). The faecal metabolome of black howler monkeys ( Alouatta pigra ) varies in response to seasonal dietary changes. Molecular Ecology, 31(15), 4146–4161. https://doi.org/10.1111/mec.16559 

  • Song, Y., Perlman, K., & Gyarmati, P. (2022). Microbial and host factors contribute to bloodstream infection in a pediatric acute lymphocytic leukemia mouse model. Heliyon, 8(11), e11340. https://doi.org/10.1016/j.heliyon.2022.e11340 

  • Mouton, J. C., Duckworth, R. A., Paitz, R. T., & Martin, T. E. (2022). Nest predation risk and deposition of yolk steroids in a cavity-nesting songbird: an experimental test. Journal of Experimental Biology, 225(7), jeb243047. https://doi.org/10.1242/jeb.243047 

  • Dong, H., & Cronan, J. E. (2022). The Two Acyl Carrier Proteins of Enterococcus faecalis Have Nonredundant Functions. Journal of Bacteriology, 204(9), e00202-22. https://doi.org/10.1128/jb.00202-22 

  • Mancini, S. L., Early, P. J., Slater, B. M., Olby, N. J., Mariani, C. L., Munana, K. R., Woelfel, C. W., Schacher, J. A., Zhong, L., & Messenger, K. M. (2022). Novel subcutaneous cytarabine infusion with the Omnipod system in dogs with meningoencephalomyelitis of unknown etiology. American Journal of Veterinary Research, 83(9), ajvr.22.03.0046. https://doi.org/10.2460/ajvr.22.03.0046 

  • Maitra, S., Long, S. P., & Singh, V. (2022). Optimizing Chemical-Free Pretreatment for Maximizing Oil/Lipid Recovery From Transgenic Bioenergy Crops and Its Rapid Analysis Using Time Domain-NMR. Frontiers in Energy Research, 10, 840418. https://doi.org/10.3389/fenrg.2022.840418 

  • Pacyga, D. C., Ryva, B. A., Nowak, R. A., Bulun, S. E., Yin, P., Li, Z., Flaws, J. A., & Strakovsky, R. S. (2022). Midlife Urinary Phthalate Metabolite Concentrations and Prior Uterine Fibroid Diagnosis. International Journal of Environmental Research and Public Health, 19(5), 2741. https://doi.org/10.3390/ijerph19052741 

  • Chiu, K., Bashir, S., Abdel-Hamid, A., Clark, L., Laws, M., Cann, I., Nowak, R., & Flaws, J. (2022). Isolation of DiNP-Degrading Microbes from the Mouse Colon and the Influence DiNP Exposure Has on the Microbiota, Intestinal Integrity, and Immune Status of the Colon. Toxics, 10(2), 75. https://doi.org/10.3390/toxics10020075 

  • Oh, C., Chowdhury, R., Samineni, L., Shisler, J. L., Kumar, M., & Nguyen, T. H. (2022). Inactivation Mechanism and Efficacy of Grape Seed Extract for Human Norovirus Surrogate. Applied and Environmental Microbiology, 88(9), e02247-21. https://doi.org/10.1128/aem.02247-21 

  • Gupta, S. K., Pfeltz, R. F., Wilkinson, B. J., & Gustafson, J. E. (2022). Transcriptomic and Metabolomic Analysis of a Fusidic Acid-Selected fusA Mutant of Staphylococcus aureus. Antibiotics, 11(8), 1051. https://doi.org/10.3390/antibiotics11081051 

  • Lopez-Ortiz, C., Edwards, M., Natarajan, P., Pacheco-Valenciana, A., Nimmakayala, P., Adjeroh, D. A., Sirbu, C., & Reddy, U. K. (2022). Peppers in Diet: Genome-Wide Transcriptome and Metabolome Changes in Drosophila melanogaster. International Journal of Molecular Sciences, 23(17), 9924. https://doi.org/10.3390/ijms23179924 

  • Seedorf, H., Brugère, J.-F., Ikeda-Ohtsubo, W., Mikaelyan, A., & Ngugi, D. K. (Eds.). (2022). Beyond Conventional Models: Expanding Experimental Systems for Animal-Microbiome Interaction Research. Frontiers Media SA. https://doi.org/10.3389/978-2-83250-317-1 

  • Favela, A., Bohn, M., & Kent, A. (2022). N-Cycling Microbiome Recruitment Differences Between Modern and Wild Zea mays. Phytobiomes Journal, 6(2), 151–160. https://doi.org/10.1094/PBIOMES-08-21-0049-R 

  • Eshel, G., Duppen, N., Wang, G., Oh, D., Kazachkova, Y., Herzyk, P., Amtmann, A., Gordon, M., Chalifa‐Caspi, V., Oscar, M. A., Bar‐David, S., Marshall‐Colon, A., Dassanayake, M., & Barak, S. (2022). Positive selection and heat‐response transcriptomes reveal adaptive features of the Brassicaceae desert model, Anastatica hierochuntica. New Phytologist, 236(3), 1006–1026. https://doi.org/10.1111/nph.18411 

  • Morales, M. E., Allegrini, M., Iocoli, G. A., Basualdo, J., Villamil, M. B., & Zabaloy, M. C. (2022). Rhizospheric Microbiome Responses to Cover Crop Suppression Methods. Agronomy, 12(10), 2246. https://doi.org/10.3390/agronomy12102246 

  • Parker, E. N., Cain, B. N., Hajian, B., Ulrich, R. J., Geddes, E. J., Barkho, S., Lee, H. Y., Williams, J. D., Raynor, M., Caridha, D., Zaino, A., Shekhar, M., Muñoz, K. A., Rzasa, K. M., Temple, E. R., Hunt, D., Jin, X., Vuong, C., Pannone, K., … Hergenrother, P. J. (2022). An Iterative Approach Guides Discovery of the FabI Inhibitor Fabimycin, a Late-Stage Antibiotic Candidate with In Vivo Efficacy against Drug-Resistant Gram-Negative Infections. ACS Central Science, 8(8), 1145–1158. https://doi.org/10.1021/acscentsci.2c00598 

  • Kelley, D. P., Chaichi, A., Duplooy, A., Singh, D., Gartia, M. R., & Francis, J. (2022). Labelfree mapping and profiling of altered lipid homeostasis in the rat hippocampus after traumatic stress: Role of oxidative homeostasis. Neurobiology of Stress, 20, 100476. https://doi.org/10.1016/j.ynstr.2022.100476 

  • Reed, A. D., Fletcher, J. R., Huang, Y. Y., Thanissery, R., Rivera, A. J., Parsons, R. J., Stewart, A. K., Kountz, D. J., Shen, A., Balskus, E. P., & Theriot, C. M. (2022). The Stickland Reaction Precursor trans -4-Hydroxy- l -Proline Differentially Impacts the Metabolism of Clostridioides difficile and Commensal Clostridia. MSphere, 7(2), e00926-21. https://doi.org/10.1128/msphere.00926-21 

  • Das, S., Song, Z., Han, H., Ge, X., Desert, R., Athavale, D., Babu Komakula, S. S., Magdaleno, F., Chen, W., Lantvit, D., Guzman, G., & Nieto, N. (2022). Intestinal Osteopontin Protects From Alcohol-induced Liver Injury by Preserving the Gut Microbiome and the Intestinal Barrier Function. Cellular and Molecular Gastroenterology and Hepatology, 14(4), 813–839. https://doi.org/10.1016/j.jcmgh.2022.06.012 

  • Hepowit, N. L., Blalock, E., Lee, S., MacGurn, J. A., & Dickson, R. C. (2022). Reduced sphingolipid biosynthesis modulates proteostasis networks to enhance longevity [Preprint]. Molecular Biology. https://doi.org/10.1101/2022.05.20.492522 

  • Miller, J. C., & Schuler, M. A. (2022). Single mutations toggle the substrate selectivity of multifunctional Camptotheca secologanic acid synthases. Journal of Biological Chemistry, 298(9), 102237. https://doi.org/10.1016/j.jbc.2022.102237 

  • Martins, A. C. Q., Mota, A. P. Z., Carvalho, P. A. S. V., Passos, M. A. S., Gimenes, M. A., Guimaraes, P. M., & Brasileiro, A. C. M. (2022). Transcriptome Responses of Wild Arachis to UV-C Exposure Reveal Genes Involved in General Plant Defense and Priming. Plants, 11(3), 408. https://doi.org/10.3390/plants11030408 

2021

  • Martin, M. J., Pralle, R. S., Bernstein, I. R., VandeHaar, M. J., Weigel, K. A., Zhou, Z., & White, H. M. (2021). Circulating Metabolites Indicate Differences in High and Low Residual Feed Intake Holstein Dairy Cows. Metabolites, 11(12), 868. https://doi.org/10.3390/metabo11120868 

  • Zuo, Q., Mogol, A. N., Liu, Y.-J., Santaliz Casiano, A., Chien, C., Drnevich, J., Imir, O. B., Kulkoyluoglu-Cotul, E., Park, N. H., Shapiro, D. J., Park, B. H., Ziegler, Y., Katzenellenbogen, B. S., Aranda, E., O’Neill, J. D., Raghavendra, A. S., Tripathy, D., & Madak Erdogan, Z. (2022). Targeting Metabolic Adaptations in the Breast Cancer–Liver Metastatic Niche Using Dietary Approaches to Improve Endocrine Therapy Efficacy. Molecular Cancer Research, 20(6), 923–937. https://doi.org/10.1158/1541-7786.MCR-21-0781 

  • Miller, J. C., Hollatz, A. J., & Schuler, M. A. (2021). P450 variations bifurcate the early terpene indole alkaloid pathway in Catharanthus roseus and Camptotheca acuminata. Phytochemistry, 183, 112626. https://doi.org/10.1016/j.phytochem.2020.112626 

  • Yeoman, C. J., Fields, C. J., Lepercq, P., Ruiz, P., Forano, E., White, B. A., & Mosoni, P. (2021). In Vivo Competitions between Fibrobacter succinogenes, Ruminococcus flavefaciens, and Ruminoccus albus in a Gnotobiotic Sheep Model Revealed by Multi-Omic Analyses. MBio, 12(2), e03533-20. https://doi.org/10.1128/mBio.03533-20 

  • Concepcion, J. C. T., Kaundun, S. S., Morris, J. A., Hutchings, S., Strom, S. A., Lygin, A. V., & Riechers, D. E. (2021). Resistance to a nonselective 4‐hydroxyphenylpyruvate dioxygenase‐inhibiting herbicide via novel reduction–dehydration–glutathione conjugation in Amaranthus tuberculatus. New Phytologist, 232(5), 2089–2105. https://doi.org/10.1111/nph.17708 

  • Arnold, W. R., Carnevale, L. N., Xie, Z., Baylon, J. L., Tajkhorshid, E., Hu, H., & Das, A. (2021). Anti-inflammatory dopamine- and serotonin-based endocannabinoid epoxides reciprocally regulate cannabinoid receptors and the TRPV1 channel. Nature Communications, 12(1), 926. https://doi.org/10.1038/s41467-021-20946-6 

  • Foley, M. H., O’Flaherty, S., Allen, G., Rivera, A. J., Stewart, A. K., Barrangou, R., & Theriot, C. M. (2021). Lactobacillus bile salt hydrolase substrate specificity governs bacterial fitness and host colonization. Proceedings of the National Academy of Sciences, 118(6), e2017709118. https://doi.org/10.1073/pnas.2017709118 

  • Strom, S. A., Hager, A. G., Concepcion, J. C. T., Seiter, N. J., Davis, A. S., Morris, J. A., Kaundun, S. S., & Riechers, D. E. (2021). Metabolic Pathways for S -Metolachlor Detoxification Differ Between Tolerant Corn and Multiple-Resistant Waterhemp. Plant and Cell Physiology, 62(11), 1770–1785. https://doi.org/10.1093/pcp/pcab132 

  • Wang, G., DiTusa, S. F., Oh, D., Herrmann, A. D., Mendoza‐Cozatl, D. G., O’Neill, M. A., Smith, A. P., & Dassanayake, M. (2021). Cross species multi‐omics reveals cell wall sequestration and elevated global transcript abundance as mechanisms of boron tolerance in plants. New Phytologist, 230(5), 1985–2000. https://doi.org/10.1111/nph.17295 

  • Mathur, B., Shajahan, A., Arif, W., Chen, Q., Hand, N. J., Abramowitz, L. K., Schoonjans, K., Rader, D. J., Kalsotra, A., Hanover, J. A., Azadi, P., & Anakk, S. (2021). Nuclear receptors FXR and SHP regulate protein N-glycan modifications in the liver. Science Advances, 7(17), eabf4865. https://doi.org/10.1126/sciadv.abf4865 

  • Southey, B. R., Bolt, C. R., Rymut, H. E., Keever, M. R., Ulanov, A. V., Li, Z., Rund, L. A., Johnson, R. W., & Rodriguez-Zas, S. L. (2021). Impact of Weaning and Maternal Immune Activation on the Metabolism of Pigs. Frontiers in Molecular Biosciences, 8, 660764. https://doi.org/10.3389/fmolb.2021.660764 

  • Palombo, V., Alharthi, A., Batistel, F., Parys, C., Guyader, J., Trevisi, E., D’Andrea, M., & Loor, J. J. (2021). Unique adaptations in neonatal hepatic transcriptome, nutrient signaling, and one-carbon metabolism in response to feeding ethyl cellulose rumen-protected methionine during late-gestation in Holstein cows. BMC Genomics, 22(1), 280. https://doi.org/10.1186/s12864-021-07538-w 

  • Mohan, V., Dutta, B., Ripani, R., & Jain, P. K. (2021). Room-temperature catalyst-free methane chlorination. Cell Reports Physical Science, 2(9), 100545. https://doi.org/10.1016/j.xcrp.2021.100545 

  • Borgogna, J.-L. C., Shardell, M. D., Grace, S. G., Santori, E. K., Americus, B., Li, Z., Ulanov, A., Forney, L., Nelson, T. M., Brotman, R. M., Ravel, J., & Yeoman, C. J. (2021). Biogenic Amines Increase the Odds of Bacterial Vaginosis and Affect the Growth of and Lactic Acid Production by Vaginal Lactobacillus spp. Applied and Environmental Microbiology, 87(10), e03068-20. https://doi.org/10.1128/AEM.03068-20 

  • Zuo, Q., Chen, K. L., Arredondo Eve, A., Liu, Y.-J., Kim, S. H., Katzenellenbogen, B. S., Katzenellenbogen, J. A., & Madak-Erdogan, Z. (2021). Pathway Preferential Estrogens Prevent Hepatosteatosis Due to Ovariectomy and High-Fat Diets. Nutrients, 13(10), 3334. https://doi.org/10.3390/nu13103334 

  • Iwadate, Y., Ramezanifard, R., Golubeva, Y. A., Fenlon, L. A., & Slauch, J. M. (2021). PaeA (YtfL) protects from cadaverine and putrescine stress in Salmonella Typhimurium and E. coli. Molecular Microbiology, 115(6), 1379–1394. https://doi.org/10.1111/mmi.14686 

  • Pacyga, D. C., Gardiner, J. C., Flaws, J. A., Li, Z., Calafat, A. M., Korrick, S. A., Schantz, S. L., & Strakovsky, R. S. (2021). Maternal phthalate and phthalate alternative metabolites and urinary biomarkers of estrogens and testosterones across pregnancy. Environment International, 155, 106676. https://doi.org/10.1016/j.envint.2021.106676 

  • Haloi, N., Vasan, A. K., Geddes, E. J., Prasanna, A., Wen, P.-C., Metcalf, W. W., Hergenrother, P. J., & Tajkhorshid, E. (2021). Rationalizing the generation of broad spectrum antibiotics with the addition of a positive charge. Chemical Science, 12(45), 15028–15044. https://doi.org/10.1039/D1SC04445A 

  • Chiang, C., Pacyga, D. C., Strakovsky, R. S., Smith, R. L., James-Todd, T., Williams, P. L., Hauser, R., Meling, D. D., Li, Z., & Flaws, J. A. (2021). Urinary phthalate metabolite concentrations and serum hormone levels in pre- and perimenopausal women from the Midlife Women’s Health Study. Environment International, 156, 106633. https://doi.org/10.1016/j.envint.2021.106633 

  • Vargas, O., Gutiérrez, M. S., Caruffo, M., Valderrama, B., Medina, D. A., García, K., Reyes-Jara, A., Toro, M., Feijóo, C. G., & Navarrete, P. (2021). Probiotic Yeasts and Vibrio anguillarum Infection Modify the Microbiome of Zebrafish Larvae. Frontiers in Microbiology, 12, 647977. https://doi.org/10.3389/fmicb.2021.647977 

  • Borgogna, J.-L. C., Anastario, M., Firemoon, P., Rink, E., Ricker, A., Ravel, J., Brotman, R. M., & Yeoman, C. J. (2021). Vaginal microbiota of American Indian women and associations with measures of psychosocial stress. PLOS ONE, 16(12), e0260813. https://doi.org/10.1371/journal.pone.0260813 

  • Louie, A., Kim, J., Soto-Diaz, K., Dibaeinia, P., Koito, H., Sinha, S., Nowak, R., Das, A., & Steelman, A. (2021). Influenza causes alterations to oligodendrocyte-specific transcripts and the myelin lipidome in the adult mouse central nervous system. [Preprint]. In Review. https://doi.org/10.21203/rs.3.rs-310861/v1 

  • Jagtap, S. S., Bedekar, A. A., Singh, V., Jin, Y.-S., & Rao, C. V. (2021). Metabolic engineering of the oleaginous yeast Yarrowia lipolytica PO1f for production of erythritol from glycerol. Biotechnology for Biofuels, 14(1), 188. https://doi.org/10.1186/s13068-021-02039-0 

  • Gresse, R., Chaucheyras-Durand, F., Garrido, J. J., Denis, S., Jiménez-Marín, A., Beaumont, M., Van De Wiele, T., Forano, E., & Blanquet-Diot, S. (2021). Pathogen Challenge and Dietary Shift Alter Microbiota Composition and Activity in a Mucin-Associated in vitro Model of the Piglet Colon (MPigut-IVM) Simulating Weaning Transition. Frontiers in Microbiology, 12, 703421. https://doi.org/10.3389/fmicb.2021.703421 

  • Banerjee, S., Poore, M., Gerdes, S., Nedveck, D., Lauridsen, L., Kristensen, H. T., Jensen, H. M., Byrd, P. M., Ouwehand, A. C., Patterson, E., & Morovic, W. (2021). Transcriptomics reveal different metabolic strategies for acid resistance and gamma-aminobutyric acid (GABA) production in select Levilactobacillus brevis strains. Microbial Cell Factories, 20(1), 173. https://doi.org/10.1186/s12934-021-01658-4 

  • Weston, W. C., Hales, K. H., & Hales, D. B. (2021). Flaxseed Increases Animal Lifespan and Reduces Ovarian Cancer Severity by Toxically Augmenting One-Carbon Metabolism. Molecules, 26(18), 5674. https://doi.org/10.3390/molecules26185674 

  • Gresse, R., Chaucheyras-Durand, F., Denis, S., Beaumont, M., Van De Wiele, T., Forano, E., & Blanquet-Diot, S. (2021). Weaning-associated feed deprivation stress causes microbiota disruptions in a novel mucin-containing in vitro model of the piglet colon (MPigut-IVM). Journal of Animal Science and Biotechnology, 12(1), 75. https://doi.org/10.1186/s40104-021-00584-0 

  • Andrés, S., Madsen, O., Montero, O., Martín, A., & Giráldez, F. J. (2021). The Role of Feed Restriction on DNA Methylation, Feed Efficiency, Metabolome, Biochemical Profile, and Progesterone Patterns in the Female Filial Generation (F1) Obtained From Early Feed Restricted Ewes (F0). Frontiers in Physiology, 12, 779054. https://doi.org/10.3389/fphys.2021.779054 

  • Pantha, P., Oh, D.-H., Longstreth, D., & Dassanayake, M. (2021). Living with high potassium: a balance between nutrient acquisition and stress signaling during K-induced salt stress [Preprint]. Plant Biology. https://doi.org/10.1101/2021.07.01.450778 

  • Geddes, E. J., Li, Z., & Hergenrother, P. J. (2021). An LC-MS/MS assay and complementary web-based tool to quantify and predict compound accumulation in E. coli. Nature Protocols, 16(10), 4833–4854. https://doi.org/10.1038/s41596-021-00598-y 

  • Shao, T., Ireland, F. A., McCann, J. C., & Shike, D. W. (2021). Effects of supplements differing in fatty acid profile to late gestational beef cows on cow performance, calf growth performance, and mRNA expression of genes associated with myogenesis and adipogenesis. Journal of Animal Science and Biotechnology, 12(1), 67. https://doi.org/10.1186/s40104-021-00588-w 

  • Tanprasertsuk, J., Scott, T. M., Barbey, A. K., Barger, K., Wang, X.-D., Johnson, M. A., Poon, L. W., Vishwanathan, R., Matthan, N. R., Lichtenstein, A. H., Ferland, G., & Johnson, E. J. (2021). Carotenoid-Rich Brain Nutrient Pattern Is Positively Correlated With Higher Cognition and Lower Depression in the Oldest Old With No Dementia. Frontiers in Nutrition, 8, 704691. https://doi.org/10.3389/fnut.2021.704691 

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  • Khairnar, A., Sunsunwal, S., Babu, P., & Ramya, T. N. C. (2021). Novel serine/threonine-O-glycosylation with N -acetylneuraminic acid and 3-deoxy-D-manno-octulosonic acid by bacterial flagellin glycosyltransferases. Glycobiology, 31(3), 288–306. https://doi.org/10.1093/glycob/cwaa084 

2020

  • Barclay, R.D., Beals, J.W., Drnevich, J., Imai, B.S., Yau, P.M., Ulanov, A.V., Tillin, N.A., Villegas-Montes, M., Paluska, S.A., Watt, P.W. and De Lisio, M., 2020. Ingestion of lean meat elevates muscle inositol hexakisphosphate kinase 1 protein content independent of a distinct postprandial circulating proteome in young adults with obesity. Metabolism, 102, p.153996.
  • Bentel, M.J., Yu, Y., Xu, L., Kwon, H., Li, Z., Wong, B.M., Men, Y. and Liu, J., 2020. Degradation of perfluoroalkyl ether carboxylic acids with hydrated electrons: structure–reactivity relationships and environmental implications. Environmental science & technology, 54(4), pp.2489-2499.
  • Byun, S., Seok, S., Kim, Y.C., Zhang, Y., Yau, P., Iwamori, N., Xu, H.E., Ma, J., Kemper, B. and Kemper, J.K., 2020. Fasting-induced FGF21 signaling activates hepatic autophagy and lipid degradation via JMJD3 histone demethylase. Nature communications, 11(1), pp.1-15.
  • Borgogna, J.L.C., Shardell, M.D., Yeoman, C.J., Ghanem, K.G., Kadriu, H., Ulanov, A.V., Gaydos, C.A., Hardick, J., Robinson, C.K., Bavoil, P.M. and Ravel, J., 2020. The association of Chlamydia trachomatis and Mycoplasma genitalium infection with the vaginal metabolome. Scientific reports, 10(1), pp.1-10.
  • Chen, W.T., Wu, Z., Si, B. and Zhang, Y., 2020. Renewable diesel blendstocks and bioprivileged chemicals distilled from algal biocrude oil converted via hydrothermal liquefaction. Sustainable Energy & Fuels, 4(10), pp.5165-5178.
  • Cotul, E.K., Zuo, Q., Santaliz-Casiano, A., Imir, O.B., Mogol, A.N., Tunc, E., Duong, K., Lee, J.K., Ramesh, R., Odukoya, E. and Kesavadas, M.P., 2020. Combined Targeting of Estrogen Receptor Alpha and Exportin 1 in Metastatic Breast Cancers. Cancers, 12(9), p.2397.
  • Ellerbrock, R.E., Canisso, I.F., Roady, P.J., Litsky, A., Durgam, S., Podico, G., Li, Z. and Lima, F.S., 2020. Administration of enrofloxacin during late pregnancy failed to induce lesions in the resulting newborn foals. Equine veterinary journal, 52(1), pp.136-143.
  • Ellerbrock, R.E., Curcio, B.R., Zhong, L., Honoroto, J., Wilkins, P., Lima, F.S., Giguere, S. and Canisso, I.F., 2020. Pharmacokinetics of intravenous and oral administration of enrofloxacin to the late-term pregnant and non-pregnant mares. Equine veterinary journal, 52(3), pp.464-470.
  • Elolimy, A., Alharthi, A., Zeineldin, M., Parys, C. and Loor, J.J., 2020. Residual feed intake divergence during the preweaning period is associated with unique hindgut microbiome and metabolome profiles in neonatal Holstein heifer calves. Journal of animal science and biotechnology, 11(1), pp.1-15.
  • Fleming, S.A., Mudd, A.T., Hauser, J., Yan, J., Metairon, S., Steiner, P., Donovan, S.M. and Dilger, R.N., 2020. Dietary Oligofructose Alone or in Combination with 2ʹ-Fucosyllactose Differentially Improves Recognition Memory and Hippocampal mRNA Expression. Nutrients, 12(7), p.2131.
  • Gyarmati, P., Song, Y., Dotimas, J., Yoshiba, G. and Christison, A., 2020. Cross-sectional comparisons of gut microbiome and short-chain fatty acid levels among children with varied weight classifications. Pediatric Obesity, p.e12750.
  • Hatcher, K.M., Smith, R.L., Chiang, C., Li, Z., Flaws, J.A. and Mahoney, M.M., 2020. Association of phthalate exposure and endogenous hormones with self-reported sleep disruptions: results from the Midlife Women's Health Study. Menopause, 27(11), pp.1251-1264.
  • Hauber, M.E., Abolins-Abols, M., Kim, C.R. and Paitz, R.T., 2020. Inter-individual variation in anti-parasitic egg rejection behavior: a test of the maternal investment hypothesis. Integrative Organismal Biology, 2(1), p.obaa014.
  • Hong, S., Zhang, X., Lake, R.J., Pawel, G.T., Guo, Z., Pei, R. and Lu, Y., 2020. A photo-regulated aptamer sensor for spatiotemporally controlled monitoring of ATP in the mitochondria of living cells. Chemical Science, 11(3), pp.713-720.
  • Kenny, P.J., Kim, M., Skariah, G., Nielsen, J., Lannom, M.C. and Ceman, S., 2020. The FMRP–MOV10 complex: a translational regulatory switch modulated by G-Quadruplexes. Nucleic acids research, 48(2), pp.862-878.
  • Le, P., Vaidya, R., Smith, L.D., Han, Z., Zahid, M.U., Winter, J., Sarkar, S., Chung, H.J., Perez-Pinera, P., Selvin, P.R. and Smith, A.M., 2020. Optimizing Quantum Dot Probe Size for Single-Receptor Imaging. ACS nano, 14(7), pp.8343-8358.
  • Liu, S., Zhang, Z., Abelson, J.R. and Girolami, G.S., 2020. Platinum ω-Alkenyl Compounds as Chemical Vapor Deposition Precursors. Mechanistic Studies of the Thermolysis of Pt [CH2CMe2CH2CH═ CH2] 2 in Solution and the Origin of Rapid Nucleation. Organometallics, 39(21), pp.3817-3829.
  • Liu, S., Zhang, Z., Gray, D., Zhu, L., Abelson, J.R. and Girolami, G.S., 2020. Platinum ω-Alkenyl Compounds as Chemical Vapor Deposition Precursors: Synthesis and Characterization of Pt [CH2CMe2CH2CH═ CH2] 2 and the Impact of Ligand Design on the Deposition Process. Chemistry of Materials, 32(21), pp.9316-9334.
  • Luzardo-Ocampo, I., Loarca-Piña, G. and de Mejia, E.G., 2020. Gallic and butyric acids modulated NLRP3 inflammasome markers in a co-culture model of intestinal inflammation. Food and Chemical Toxicology, 146, p.111835.
  • Mazewski, C., Luna-Vital, D., Berhow, M. and Gonzalez de Mejia, E., 2020. Reduction of colitisassociated
    colon carcinogenesis by a black lentil water extract through inhibition of inflammatory and immunomodulatory cytokines. Carcinogenesis, 41(6), pp.790-803.
  • McGhee, K.E., Paitz, R.T., Baker, J.A., Foster, S.A. and Bell, A.M., 2020. Effects of predation risk on egg steroid profiles across multiple populations of threespine stickleback. Scientific reports, 10(1), pp.1-14.
  • Motika, S.E., Ulrich, R.J., Geddes, E.J., Lee, H.Y., Lau, G.W. and Hergenrother, P.J., 2020. Gramnegative antibiotic active through inhibition of an essential riboswitch. Journal of the American Chemical Society, 142(24), pp.10856-10862.
  • Nobu, M.K., Narihiro, T., Mei, R., Kamagata, Y., Lee, P.K., Lee, P.H., McInerney, M.J. and Liu, W.T., 2020. Catabolism and interactions of uncultured organisms shaped by ecothermodynamics in methanogenic bioprocesses. Microbiome, 8(1), pp.1-16.
  • Parker, E.N., Drown, B.S., Geddes, E.J., Lee, H.Y., Ismail, N., Lau, G.W. and Hergenrother, P.J., 2020. Implementation of permeation rules leads to a FabI inhibitor with activity against Gramnegative pathogens. Nature microbiology, 5(1), pp.67-75.
  • Perlmutter, S.J., Geddes, E.J., Drown, B.S., Motika, S.E., Lee, M.R. and Hergenrother, P.J., 2020. Compound Uptake into E. coli Can Be Facilitated by N-Alkyl Guanidiniums and Pyridiniums. ACS infectious diseases, 7(1), pp.162-173.
  • Salvador, A.F., Askow, A.T., McKenna, C.F., Fang, H.Y., Burke, S.K., Li, Z., Ulanov, A.V., Paluska, S.A., Petruzzello, S.J., Boppart, M.D. and Oliver, J.M., 2020. Resistance Exercise-induced Regulation of Muscle Protein Synthesis to Intraset Rest. Medicine and science in sports and
    exercise, 52(5), pp.1022-1030.
  • Shao, T., Ireland, F.A., McCann, J.C. and Shike, D.W., 2020. Effects of supplements differing in fatty acid profile to late gestational beef cows on cow performance, calf growth performance, and gene expression.
  • Stack, T.M., Morrison, K.N., Dettmer, T.M., Wille, B., Kim, C., Joyce, R., Jermain, M., Naing, Y.T., Bhatti, K., Francisco, B.S. and Carter, M.S., 2020. Characterization of an l-ascorbate catabolic pathway with unprecedented enzymatic transformations. Journal of the American Chemical Society, 142(4), pp.1657-1661.
  • Tao, L., Pattenaude, S.A., Joshi, S., Begley, T.P., Rauchfuss, T.B. and Britt, R.D., 2020. Radical SAM enzyme HydE generates adenosylated Fe (i) intermediates en route to the [FeFe]-hydrogenase catalytic H-cluster. Journal of the American Chemical Society, 142(24), pp.10841-
    10848.
  • Wang, Y. and Brieher, W.M., 2020. CD2AP links actin to PI3 kinase activity to extend epithelial cell height and constrain cell area. Journal of Cell Biology, 219(1).
  • Xue, P., Si, T., Mishra, S., Zhang, L., Choe, K., Sweedler, J.V. and Zhao, H., 2020. A mass spectrometry-based high-throughput screening method for engineering fatty acid synthases with improved production of medium-chain fatty acids. Biotechnology and bioengineering,
    117(7), pp.2131-2138.
  • Yu, Y., Zhang, K., Li, Z., Ren, C., Chen, J., Lin, Y.H., Liu, J. and Men, Y., 2020. Microbial Cleavage of C–F Bonds in Two C6 Per-and Polyfluorinated Compounds via Reductive Defluorination. Environmental science & technology, 54(22), pp.14393-14402.

2019

  • Acedo, J.Z., Bothwell, I.R., An, L., Trouth, A., Frazier, C. and Van Der Donk, W.A., 2019. OMethyltransferase-mediated Incorporation of a β-Amino Acid in Lanthipeptides. Journal of the American Chemical Society, 141(42), pp.16790-16801.
  • Bentel, M.J., Yu, Y., Xu, L., Li, Z., Wong, B.M., Men, Y. and Liu, J., 2019. Defluorination of per-and polyfluoroalkyl substances (PFASs) with hydrated electrons: structural dependence and implications to PFAS remediation and management. Environmental science & technology,
    53(7), pp.3718-3728.
  • Caputo, M.P., Radlowski, E.C., Lawson, M.A., Antonson, A.M., Watson, J.E., Matt, S.M., Leyshon, B.J., Das, A. and Johnson, R.W., 2019. Herring roe oil supplementation alters microglial cell gene expression and reduces peripheral inflammation after immune activation in a neonatal piglet model. Brain, behavior, and immunity, 81, pp.455-469.
  • Cavett, C.L., Li, Z., McKiernan, B.C. and Reinhart, J.M., 2019. Pharmacokinetics of a modified, compounded theophylline product in dogs. Journal of veterinary pharmacology and therapeutics, 42(6), pp.593-601.
  • Chan, A.H., D'Souza, R.F., Beals, J.W., Zeng, N., Prodhan, U., Fanning, A.C., Poppitt, S.D., Li, Z., Burd, N.A., Cameron-Smith, D. and Mitchell, C.J., 2019. The degree of aminoacidemia after dairy protein ingestion does not modulate the postexercise anabolic response in young men: a randomized controlled trial. The Journal of nutrition, 149(9), pp.1511-1522.
  • Dong, Y., Sanford, R.A., Inskeep, W.P., Srivastava, V., Bulone, V., Fields, C.J., Yau, P.M., Sivaguru, M., Ahrén, D., Fouke, K.W. and Weber, J., 2019. Physiology, Metabolism, and Fossilization of Hot-Spring Filamentous Microbial Mats. Astrobiology, 19(12), pp.1442-1458.
  • Chena, W.T., Wua, Z., Sia, B. and Zhanga, Y., 2019. Renewable Diesel Blendstocks and Biopriviliged Chemicals Distilled from Algal Biocrude Oil Converted via Hydrothermal Liquefaction.
  • Coleman, D.N., Alharthi, A., Lopreiato, V., Trevisi, E., Miura, M., Pan, Y.X. and Loor, J.J., 2019. Choline supply during negative nutrient balance alters hepatic cystathionine β-synthase, intermediates of the methionine cycle and transsulfuration pathway, and liver function in Holstein cows. Journal of dairy science, 102(9), pp.8319-8331.
  • Coleman, D.N., Vailati-Riboni, M., Elolimy, A.A., Cardoso, F.C., Rodriguez-Zas, S.L., Miura, M., Pan, Y.X. and Loor, J.J., 2019. Hepatic betaine-homocysteine methyltransferase and methionine synthase activity and intermediates of the methionine cycle are altered by choline supply during negative energy balance in Holstein cows. Journal of dairy science, 102(9), pp.8305-8318.
  • Ding, J., Johnson, J., Chu, Y.F. and Feng, H., 2019. Enhancement of γ-aminobutyric acid, avenanthramides, and other health-promoting metabolites in germinating oats (Avena sativa L.) treated with and without power ultrasound. Food chemistry, 283, pp.239-247.
  • Ellerbrock, R.E., Canisso, I.F., Roady, P.J., Rothrock, L.T., Zhong, L., Wilkins, P., Dirikolu, L., Lima, F.S. and Honoroto, J., 2019. Diffusion of enrofloxacin to pregnancy fluids and effects on fetal cartilage after intravenous administration to late pregnant mares. Equine veterinary journal, 51(4), pp.544-551.
  • Huff, H.C., Maroutsos, D. and Das, A., 2019. Lipid composition and macromolecular crowding effects on CYP2J2-mediated drug metabolism in nanodiscs. Protein Science, 28(5), pp.928-940.
  •   Li, M., Si, B., Zhang, Y., Watson, J. and Aierzhati, A., 2019. Reduce recalcitrance of cornstalk using post-hydrothermal liquefaction wastewater pretreatment. Bioresource technology, 279, pp.57-66.
  • Mast, D.H., Checco, J.W. and Sweedler, J.V., 2019. Differential Post-translational Amino Acid Isomerization Found Among Neuropeptides in Aplysia californica. ACS Chemical Biology. Merrill, L., Chiavacci, S.J., Paitz, R.T. and Benson, T.J., 2019. Quantification of 27 yolk steroid hormones in seven shrubland bird species: interspecific patterns of hormone deposition and links to life history, development, and predation risk. Canadian Journal of Zoology, 97(1), pp.1-12.
  • Parkinson, E.I., Erb, A., Eliot, A.C., Ju, K.S. and Metcalf, W.W., 2019. Fosmidomycin biosynthesis diverges from related phosphonate natural products. Nature chemical biology, 15(11), pp.1049-1056.
  • R Arnold, W., Zelasko, S., D Meling, D., Sam, K. and Das, A., 2019. Polymorphisms of CYP2C8 Alter First-Electron Transfer Kinetics and Increase Catalytic Uncoupling. International journal of molecular sciences, 20(18), p.4626.
  • Rao, G., Pattenaude, S.A., Alwan, K., Blackburn, N.J., Britt, R.D. and Rauchfuss, T.B., 2019. The binuclear cluster of [FeFe] hydrogenase is formed with sulfur donated by cysteine of an [Fe (Cys)(CO) 2 (CN)] organometallic precursor. Proceedings of the National Academy of Sciences,
    116(42), pp.20850-20855.
  • Roy, J., Dibaeinia, P., Fan, T.M., Sinha, S. and Das, A., 2019. Global analysis of osteosarcoma lipidomes reveal altered lipid profiles in metastatic versus nonmetastatic cells. Journal of lipid research, 60(2), pp.375-387.
  • Salvador, A.F., McKenna, C.F., Alamilla, R.A., Cloud, R.M., Keeble, A.R., Miltko, A., Scaroni, S.E., Beals, J.W., Ulanov, A.V., Dilger, R.N. and Bauer, L.L., 2019. Potato ingestion is as effective as carbohydrate gels to support prolonged cycling performance. Journal of Applied Physiology,
    127(6), pp.1651-1659.
  • South, P.F., Cavanagh, A.P., Liu, H.W. and Ort, D.R., 2019. Synthetic glycolate metabolism pathways stimulate crop growth and productivity in the field. Science, 363(6422), p.eaat9077.
  • Torres, N.J., Hartson, S.D., Rogers, J. and Gustafson, J.E., 2019. Proteomic and Metabolomic Analyses of a Tea-Tree Oil-Selected Staphylococcus aureus Small Colony Variant. Antibiotics, 8(4), p.248.
  • Warner, G.R., Li, Z., Houde, M.L., Atkinson, C.E., Meling, D.D., Chiang, C. and Flaws, J.A., 2019. Ovarian metabolism of an environmentally relevant phthalate mixture. Toxicological Sciences,
    169(1), pp.246-259.
  • Ziegler, Y., Laws, M.J., Guillen, V.S., Kim, S.H., Dey, P., Smith, B.P., Gong, P., Bindman, N., Zhao, Y., Carlson, K. and Yasuda, M.A., 2019. Suppression of FOXM1 activities and breast cancer growth in vitro and in vivo by a new class of compounds. NPJ Breast Cancer, 5(1), pp.1-11.

2018

  • Abou Sawan, S., Vliet, S., Parel, J.T., Beals, J.W., Mazzulla, M., West, D.W., Philp, A., Li, Z., Paluska, S.A., Burd, N.A. and Moore, D.R., 2018. Translocation and protein complex colocalization of mTOR is associated with postprandial myofibrillar protein synthesis at rest and
    after endurance exercise. Physiological reports, 6(5).
  • An, L., Cogan, D.P., Navo, C.D., Jimenez-Oses, G., Nair, S.K. and van der Donk, W.A., 2018. Substrate-assisted enzymatic formation of lysinoalanine in duramycin. Nature chemical biology, 14(10), p.928.
  • Arnold, W.R., Weigle, A.T. and Das, A., 2018. Cross-talk of cannabinoid and endocannabinoid metabolism is mediated via human cardiac CYP2J2. Journal of inorganic biochemistry, 184, pp.88-99.
  • Beals, J.W., Skinner, S.K., McKenna, C.F., Poozhikunnel, E.G., Farooqi, S.A., van Vliet, S., Martinez, I.G., Ulanov, A.V., Li, Z., Paluska, S.A. and Burd, N.A., 2018. Altered anabolic signalling and reduced stimulation of myofibrillar protein synthesis after feeding and resistance exercise in people with obesity. The Journal of physiology, 596(21), pp.5119-5133.
  • Bishop, K.A., Lemonnier, P., Quebedeaux, J.C., Montes, C.M., Leakey, A.D. and Ainsworth, E.A., 2018. Similar photosynthetic response to elevated carbon dioxide concentration in species with different phloem loading strategies. Photosynthesis research, 137(3), pp.453-464.
  • Carnevale, L.N., Arango, A.S., Arnold, W.R., Tajkhorshid, E. and Das, A., 2018. Endocannabinoid Virodhamine is an Endogenous Inhibitor of Human Cardiovascular CYP2J2 Epoxygenase. Biochemistry, 57(46), pp.6489-6499.
  • Chen, W.T., Zhang, Y., Lee, T.H., Wu, Z., Si, B., Lee, C.F.F., Lin, A. and Sharma, B.K., 2018. Renewable diesel blendstocks produced by hydrothermal liquefaction of wet biowaste. Nature Sustainability, 1(11), p.702.
  • Ding, J., Ulanov, A.V., Dong, M., Yang, T., Nemzer, B.V., Xiong, S., Zhao, S. and Feng, H., 2018. Enhancement of gama-aminobutyric acid (GABA) and other health-related metabolites in germinated red rice (Oryza sativa L.) by ultrasonication. Ultrasonics sonochemistry, 40, pp.791-
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  • Drown, B.S., Shirai, T., Rack, J.G.M., Ahel, I. and Hergenrother, P.J., 2018. Monitoring Poly (ADPribosyl) glycohydrolase activity with a continuous fluorescent substrate. Cell chemical biology, 25(12), pp.1562-1570.
  • Ellerbrock, R.E., Canisso, I.F., Roady, P.J., Curcio, B., Lima, F.S. and Li, Z., 2018. Enrofloxacin and Its Active Metabolite Ciprofloxacin Cross the Equine Placenta and Did not Cause Lesions in the Articular Surface of the Fetuses and Foals. Journal of Equine Veterinary Science, 66, p.232.
  • Gao, J., Ko, T.P., Chen, L., Malwal, S.R., Zhang, J., Hu, X., Qu, F., Liu, W., Huang, J.W., Cheng, Y.S. and Chen, C.C., 2018. “Head-to-Middle” and “Head-to-Tail” cis-Prenyl Transferases: Structure of Isosesquilavandulyl Diphosphate Synthase. Angewandte Chemie, 130(3), pp.691-695.
  • Kim, I.J., Lee, J., Oh, S.J., Yoon, M.S., Jang, S.S., Holland, R.L., Reno, M.L., Hamad, M.N., Maeda, T., Chung, H.J. and Chen, J., 2018. Helicobacter pylori infection modulates host cell metabolism through VacA-dependent inhibition of mTORC1. Cell host & microbe, 23(5), pp.583-593.
  • Kim, Y.C., Seok, S., Byun, S., Kong, B., Zhang, Y., Guo, G., Xie, W., Ma, J., Kemper, B. and Kemper, J.K., 2018. AhR and SHP regulate phosphatidylcholine and S-adenosylmethionine levels in the one-carbon cycle. Nature communications, 9(1), p.540.
  • Litman, Z.C., Wang, Y., Zhao, H. and Hartwig, J.F., 2018. Cooperative asymmetric reactions combining photocatalysis and enzymatic catalysis. Nature, 560(7718), p.355.
  • Lygin, A.V., Kaundun, S.S., Morris, J.A., Mcindoe, E., Hamilton, A.R. and Riechers, D.E., 2018. Metabolic pathway of topramezone in multiple-resistant waterhemp (Amaranthus tuberculatus) differs from naturally tolerant maize. Frontiers in plant science, 9.
  • Manandhar, M. and Cronan, J.E., 2018. A canonical biotin synthesis enzyme, 8-amino-7-oxononanoate synthase (BioF), utilizes different acyl chain donors in Bacillus subtilis and Escherichia coli. Appl. Environ. Microbiol., 84(1), pp.e02084-17.
  • McLaughlin, M.I. and van der Donk, W.A., 2018. Stereospecific radical-mediated B12-dependent methyl transfer by the fosfomycin biosynthesis enzyme Fom3. Biochemistry, 57(33), pp.4967-4971.
  • Merrill, L., Chiavacci, S.J., Paitz, R.T. and Benson, T.J., 2018. Quantification of 27 yolk steroid hormones in seven shrubland bird species: interspecific patterns of hormone deposition and links to life history, development, and predation risk. Canadian Journal of Zoology, 97(1), pp.1-12.
  • Petronikolou, N., Hollatz, A.J., Schuler, M.A. and Nair, S.K., 2018. Loganic Acid Methyltransferase: Insights into the Specificity of Methylation on an Iridoid
    Glycoside. ChemBioChem, 19(8), pp.784-788.
  • Petronikolou, N. and Nair, S.K., 2018. Structural and Biochemical Studies of a Biocatalyst for the Enzymatic Production of Wax Esters. ACS Catalysis, 8(7), pp.6334-6344
  • Ren, H., Biswas, S., Ho, S., van der Donk, W.A. and Zhao, H., 2018. Rapid Discovery of Glycocins through Pathway Refactoring in Escherichia coli. ACS chemical biology, 13(10), pp.2966-2972.
  • Roy, J., Watson, J.E., Hong, I.S., Fan, T.M. and Das, A., 2018. Antitumorigenic Properties of Omega-3 Endocannabinoid Epoxides. Journal of medicinal chemistry, 61(13), pp.5569-5579.
  • Salvador, A.F., Skinner, S.K., Beals, J.W., Parel, J., Ulanov, A., Li, L., Paluska, S.A., Oliver, J.M. and Burd, N.A., 2018. Myofibrillar Protein Synthesis to Traditional and Cluster Sets in Trained Young Men and Women: 2646 Board# 3 June 1 3. Medicine & Science in Sports & Exercise, 50(5S), p.646.
  • Skinner, S.K., Beals, J.W., van Vliet, S., Parel, J.T., Poozhikunnel, E., Ulanov, A.V., Li, L., Jager, R., Purpura, M., Paluska, S.A. and Oliver, J., 2018. Muscle Protein Synthetic Responses After Lowdose Protein Ingestion and Resistance Exercise In Older Women: 3066 Board# 7 June 2 Medicine & Science in Sports & Exercise, 50(5S), pp.750-751.
  • Surya, A., Liu, X. and Miller, M.J., 2018. Glutathione Utilization in Lactobacillus fermentum CECT 5716. Journal of agricultural and food chemistry, 66(48), pp.12651-12656.
  • Svec, R.L., Furiassi, L., Skibinski, C.G., Fan, T.M., Riggins, G.J. and Hergenrother, P.J., 2018. Tunable Stability of Imidazotetrazines Leads to a Potent Compound for Glioblastoma. ACS chemical biology, 13(11), pp.3206-3216.
  • Ulrich, E.C., Bougioukou, D.J. and van der Donk, W.A., 2018. Investigation of Amide Bond Formation during Dehydrophos Biosynthesis. ACS chemical biology, 13(3), pp.537-541.
  • van Vliet, S., Skinner, S.K., Beals, J.W., Pagni, B.A., Fang, H.Y., Ulanov, A.V., Li, Z., Paluska, S.A., Mazzulla, M., West, D.W. and Moore, D.R., 2018. Dysregulated Handling of Dietary Protein and Muscle Protein Synthesis After Mixed-Meal Ingestion in Maintenance Hemodialysis
    Patients. Kidney international reports, 3(6), pp.1403-1415.
  • Vu, T.N., Kimura, S.Y., Plewa, M.J., Richardson, S.D. and Mariñas, B.J., 2018. Predominant NHaloacetamide and Haloacetonitrile Formation in Drinking Water via the Aldehyde Reaction Pathway. Environmental science & technology, 53(2), pp.850-859.
  • Wang, K.K.A., Ng, T.L., Wang, P., Huang, Z., Balskus, E.P. and van der Donk, W.A., 2018. Glutamic acid is a carrier for hydrazine during the biosyntheses of fosfazinomycin and kinamycin. Nature communications, 9(1), p.3687.
  • Xing, Y., Yu, Y. and Men, Y., 2018. Emerging investigators series: Occurrence and fate of emerging organic contaminants in wastewater treatment plants with an enhanced nitrification step. Environmental Science: Water Research & Technology, 4(10), pp.1412-1426.
  • Zhang, H., Freitas, D., Kim, H.S., Fabijanic, K., Li, Z., Chen, H., Mark, M.T., Molina, H., Martin, A.B., Bojmar, L. and Fang, J., 2018. Identification of distinct nanoparticles and subsets of extracellular vesicles by asymmetric flow field-flow fractionation. Nature cell biology, 20(3), p.332.
  • Zhang, X., Pandiakumar, A.K., Hamers, R.J. and Murphy, C.J., 2018. Quantification of Lipid Corona Formation on Colloidal Nanoparticles from Lipid Vesicles. Analytical chemistry, 90(24), pp.14387-14394.
  • Zhao, H., Roistacher, D.M. and Helmann, J.D., 2018. Aspartate deficiency limits peptidoglycan synthesis and sensitizes cells to antibiotics targeting cell wall synthesis in Bacillus subtilis. Molecular microbiology, 109(6), pp.826-844

2017

  • Beals, J.W., Mackenzie, R.W., van Vliet, S., Skinner, S.K., Pagni, B.A., Niemiro, G.M., Ulanov, A.V., Li, Z., Dilger, A.C., Paluska, S.A. and De Lisio, M., 2017. Protein-rich food ingestion stimulates mitochondrial protein synthesis in sedentary young adults of different BMIs. The Journal of Clinical Endocrinology & Metabolism, 102(9), pp.3415-3424.
  • Cacioppo, J.A., Lin, P.C.P., Hannon, P.R., McDougle, D.R., Gal, A. and Ko, C., 2017. Granulosa cell endothelin-2 expression is fundamental for ovulatory follicle rupture. Scientific reports, 7(1), p.817.
  • Chen, W.T., Qian, W., Zhang, Y., Mazur, Z., Kuo, C.T., Scheppe, K., Schideman, L.C. and Sharma, B.K., 2017. Effect of ash on hydrothermal liquefaction of high-ash content algal biomass. Algal Research, 25, pp.297-306.
  • Costliow, Z.A. and Degnan, P.H., 2017. Thiamine Acquisition Strategies Impact Metabolism and Competition in the Gut Microbe Bacteroides thetaiotaomicron. MSystems, 2(5), pp.e00116-17.
  • Echeverria, K.O., Lascola, K.M., Giguère, S., Foreman, J.H. and Austin, S.A., 2017. Pulmonary disposition and pharmacokinetics of minocycline in adult horses. American journal of veterinary research, 78(11), pp.1319-1328.
  • He, C., Zeng, M., Dutta, D., Koh, T.H., Chen, J. and Van Der Donk, W.A., 2017. LanCL proteins are not involved in lanthionine synthesis in mammals. Scientific Reports, 7, p.40980.
  • Lundberg, A.P., Francis, J.M., Pajak, M., Parkinson, E.I., Wycislo, K.L., Rosol, T.J., Brown, M.E., London, C.A., Dirikolu, L., Hergenrother, P.J. and Fan, T.M., 2017. Pharmacokinetics and derivation of an anticancer dosing regimen for the novel anti-cancer agent isobutyldeoxynyboquinone (IB-DNQ), a NQO1 bioactivatable molecule, in the domestic felid species. Investigational new drugs, 35(2), pp.134-144.
  • Manandhar, M. and Cronan, J.E., 2017. Pimelic acid, the first precursor of the Bacillus subtilis biotin synthesis pathway, exists as the free acid and is assembled by fatty acid synthesis. Molecular microbiology, 104(4), pp.595-607.
  • Mazzulla, M., Parel, J.T., Beals, J.W., VAN, S.V., Abou, S.S., West, D.W., Paluska, S.A., Ulanov, A.V., Moore, D.R. and Burd, N.A., 2017. Endurance Exercise Attenuates Postprandial Whole-Body Leucine Balance in Trained Men. Medicine and science in sports and exercise, 49(12), pp.2585-2592.
  • McDougle, D.R., Watson, J.E., Abdeen, A.A., Adili, R., Caputo, M.P., Krapf, J.E., Johnson, R.W., Kilian, K.A., Holinstat, M. and Das, A., 2017. Anti-inflammatory ω-3 endocannabinoid epoxides. Proceedings of the National Academy of Sciences, 114(30), pp.E6034-E6043.
  • Richter, M.F., Drown, B.S., Riley, A.P., Garcia, A., Shirai, T., Svec, R.L. and Hergenrother, P.J., 2017. Predictive compound accumulation rules yield a broad-spectrum antibiotic. Nature, 545(7654), p.299.
  • Si, T., Chao, R., Min, Y., Wu, Y., Ren, W. and Zhao, H., 2017. Automated multiplex genomescale engineering in yeast. Nature communications, 8, p.15187.
  • van Vliet, S., Shy, E.L., Abou Sawan, S., Beals, J.W., West, D.W., Skinner, S.K., Ulanov, A.V., Li, Z., Paluska, S.A., Parsons, C.M. and Moore, D.R., 2017. Consumption of whole eggs promotes greater stimulation of postexercise muscle protein synthesis than consumption of isonitrogenous amounts of egg whites in young men. The American journal of clinical nutrition, 106(6), pp.1401-1412.

Director of Metabolomics & Proteomics:
Michael La Frano, PhD, RD
Assistant Director of Metabolomics: Alexander Ulanov, PhD
Email: metabolomics@illinois.edu

 

 

Roy J. Carver Biotechnology Center

264 Burrill Hall MC-120
407 S. Goodwin Ave.
Urbana, IL 61801
217.333.7413